Let $s_i = \{p_A^i, p_B^i\}$ denote a strategy that attaches probabilities to playing $A,B$, and let $s = \{s_i, s_i\}_i$ be the set of such strategies that result in an equilibrium in a two-player symmetric game.
As you say, we think about $s_i$ to be probabilities with which a specific action is played. Whenever $s$ is not a singleton, we have multiple-equilibria, something which most branches of economics dislike, because it makes solving models quite difficult, and non-uniqueness is difficult to work with: How should we simulate the model? Which one of the equilibria is actually being played?
At least, with mixed-strategy equilibria, we know the likelihood of each of the equilibria happening. You dislike probabilities to the extent that they carry frequencies, which you say are contradicted by the notion of the game being one-shot.
Simultaneously However, the game being one-shot does not mean the game is only played once. In a world with many individuals, everyone can find a partner and play one of the strategies in $s$, to the extent that we (at the same time!) find $p_A$ of them in the equilibrium $\{A, A\}$, and the fraction $p_B$ of individuals playing the next equilibrium, etc.
Non-Simulatenously As an alternative, you could argue that in a world with a lot of anonymity, people forget the partners that they played with before. We have many people playing strategies in $s$ at time $t$, then we de-couple them, give everyone new partners and let them play again. Even if there is the possibility of meeting the same guy again: Since that possibility goes to zero, you could model this as a repeated game with a discount factor $\delta\rightarrow 0$.
Lack of Commitment Finally, think about situations which are actually repeated games, such as interactions between the government and the consumers. While this could be modeled as a repeated game, we might think that the government is not able to commit to a strategy sequence. Therefore, instead of modeling this as a repeated game, we model it as repetitions of the one-shot equilibrium: Given a time horizon $T$, we will see that $T\cdot p_A$ of the times, the government and the consumers play equilibrium $\{A, A\}$, etc.